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Interpreting the functional content of a given genomic sequence is one of the central challenges of biology today. Perhaps the most promising approach to this problem is based on the comparative method of classic biology in the modern guise of sequence comparison. For instance, protein-coding regions tend to be conserved between species. Hence, a simple method for distinguishing a functional exon from the chance absence of stop codons is to investigate its homologue from closely related species. Predicting regulatory elements is even more difficult than exon prediction, but again, comparisons pinpointing conserved sequence motifs upstream of translation start sites are helping to unravel gene regulatory networks. In addition to interspecific studies, intraspecific sequence comparison yields insights into the evolutionary forces that have acted on a species in the past. Of particular interest here is the identification of selection events such as selective sweeps. Both intra- and interspecific sequence comparisons are based on a variety of computational methods, including alignment, phylogenetic reconstruction, and coalescent theory. This article surveys the biology and the central computational ideas applied in recent comparative genomics projects. We argue that the most fruitful method of understanding the functional content of genomes is to study them in the context of related genomic sequences. In particular, such a study may reveal selection, a fundamental pointer to biological relevance. 相似文献
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Liang X Wang W Schramm KW Zhang Q Oxynos K Henkelmann B Kettrup A 《Chemosphere》2000,41(12):1889-1895
A new method has been developed to describe the quantitative relationship between molecular structures of PCDFs and their gas chromatographic retention indices on a 30-m fused silica column coated with DB-5 stationary phase. The regression equation is derived with a multiple correlation coefficient greater than 0.9995. The highest residual is 20 index units. The standard deviation is less than 7 index units. Using this regression equation, the retention indices of PCDFs for which data is not available have also been predicted. 相似文献
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Sven Scheil Guido Baumgarten Bernhard Reiter Stefan Schwartz Jan Oliver Wagner Stefan Trapp Michael Matthies 《Environmental science and pollution research international》1995,2(4):238-241
The model system CemoS1 (Chemical Exposure Model System) was developed for the exposure prediction of hazardous chemicals released to the environment.
Eight different models were implemented involving chemicals fate simulation in air, water, soil and plants after continuous
or single emissions from point and diffuse sources. Scenario studies are supported by a substance and an environmental data
base. All input data are checked on their plausibility. Substance and environmental process estimation functions facilitate
generic model calculations. CemoS is implemented in a modular structure using object-oriented programming.
e-mail: cemos@aphrodite.mathematik.uni-osnabrueck.de 相似文献
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Heavy metals in soils and crops in Southeast Asia 总被引:1,自引:0,他引:1
Zarcinas BA Ishak CF McLaughlin MJ Cozens G 《Environmental geochemistry and health》2004,26(4):343-357
In a reconnaisance soil geochemical and plant survey undertaken to study the heavy metal uptake by major food crops in Malaysia, 241 soils were analysed for cation exchange capacity (CEC), organic carbon (C), pH, electrical conductivity (EC) and available phosphorus (P) using appropriate procedures. These soils were also analysed for arsenic (As), cadmium (Cd), cobalt (Co), chromium (Cr), copper (Cu), mercury (Hg), nickel (Ni), lead (Pb) and zinc (Zn) using aqua regia digestion, together with 180 plant samples using nitric acid digestion. Regression analysis between the edible plant part and aqua regia soluble soil As, Cd, Cr, Cu, Hg, Ni, Pb and Zn concentrations sampled throughout Peninsular Malaysia, indicated a positive relationship for Pb in all the plants sampled in the survey (R2 = 0.195, p < 0.001), for Ni in corn (R2 = 0.649, p < 0.005), for Cu in chili (R2 = 0.344, p < 0.010) and for Zn in chili (R2 = 0.501, p < 0.001). Principal component analysis of the soil data suggested that concentrations of Co, Ni, Pb and Zn were strongly correlated with concentrations of Al and Fe, which is suggestive of evidence of background variations due to changes in soil mineralogy. Thus the evidence for widespread contamination of soils by these elements through agricultural activities is not strong. Chromium was correlated with soil pH and EC, Na, S, and Ca while Hg was not correlated with any of these components, suggesting diffuse pollution by aerial deposition. However As, Cd, Cu were strongly associated with organic matter and available and aqua regia soluble soil P, which we attribute to inputs in agricultural fertilisers and soil organic amendments (e.g. manures, composts). 相似文献
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The sampling performance of two high-speed samplers, (Delfino I and II), fitted with a calibrated flow meter, was studied in the open Ligurian Sea using a battery comprising 6 such Delfinos linked together. Since, in plankton counts, only those organisms should be counted which are definitely retained in the nets, several techniques for the separation of the organisms which pass through the pore of a net of a given pore size and those which are safely retained were tested. Attempts to separate these two fractions by filtration of the fixed sample through nets of different pore sizes were not successful, as living organisms were able to pass through pore sizes which retained dead organisms. However, optical sizing under the dissecting microscope during counting gave reproducible results. Using this counting technique, the influence of the pore size of plankton nets on the reproducibility of sampling of natural populations was studied. The results obtained show that live plankton passes through the net pores at a size at which fixed plankton is retained. Hence, the minimum retention size for living and dead plankton is different. By comparing samples taken with nets of different pore sizes, and counting the organisms caught according to different sizes, it was possible to determine the minimum retention size of live plankton organisms for several different net pore-sizes. The minimum retention size is, therefore, the smallest pore size at which the organisms of a certain width cannot escape through the pores of the net and are, thus, quantitatively retained in the net. By applying the criterion of minimum retention size, the influence of speed towing on the number of plankton organisms caught was studied. It was shown that the number of organisms which are safely retained, i.e., do not escape through the pores, increased with speed, reaching a plateau at 5 to 7 knots.A contribution under the Association Contract CNEN-EURATOM. Contribution No. 668 of the Euratom Biology Division. 相似文献